HL_8BN3_024

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8BN3|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.103

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BN3|1|1|C|1076
8BN3|1|1|U|1077
8BN3|1|1|U|1078
8BN3|1|1|A|1079
8BN3|1|1|A|1080
8BN3|1|1|U|1081
8BN3|1|1|U|1082
8BN3|1|1|G|1083

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

RPL5 isoform 1

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29