HL_8BN3_075

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8BN3|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_075 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.0809

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BN3|1|2|G|243
8BN3|1|2|A|244
8BN3|1|2|U|245
8BN3|1|2|G|246
8BN3|1|2|A|247
8BN3|1|2|U|248
8BN3|1|2|U|249
8BN3|1|2|C|250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain S4

Small ribosomal subunit protein eS4A

Chain S6

Small ribosomal subunit protein eS6A