HL_8BN3_089

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_089 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3236

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BN3|1|2|A|829
8BN3|1|2|U|830
8BN3|1|2|U|831
8BN3|1|2|U|832
8BN3|1|2|U|833
8BN3|1|2|G|834
8BN3|1|2|U|835
8BN3|1|2|U|836
8BN3|1|2|G|837
8BN3|1|2|G|838
8BN3|1|2|U|839
8BN3|1|2|U|840
8BN3|1|2|U|841
8BN3|1|2|C|842
8BN3|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A