HL_8BN3_092

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8BN3|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BN3_092 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.1144

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BN3|1|2|G|997
8BN3|1|2|A|998
8BN3|1|2|U|999
8BN3|1|2|C|1000
8BN3|1|2|A|1001
8BN3|1|2|G|1002
8BN3|1|2|A|1003
8BN3|1|2|U|1004
8BN3|1|2|A|1005
8BN3|1|2|C|1006
8BN3|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-B

Chain D6

RPS26B isoform 1