HL_8BPO_023

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8BPO|1|A1|U|1596, 8BPO|1|A1|A|1600, 8BPO|1|A1|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_023 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0899

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|A|1593
8BPO|1|A1|C|1594
8BPO|1|A1|G|1595
8BPO|1|A1|U|1596
8BPO|1|A1|G|1597
8BPO|1|A1|C|1598
8BPO|1|A1|G|1599
8BPO|1|A1|A|1600
8BPO|1|A1|A|1601
8BPO|1|A1|U|1602

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain O2

60S ribosomal protein L17

Chain i2

Ribosomal protein L37