HL_8BPO_027

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

8BPO|1|A1|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_027 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3062

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BPO|1|A1|C|1816
8BPO|1|A1|U|1817
8BPO|1|A1|G|1818
8BPO|1|A1|G|1819
8BPO|1|A1|U|1820
8BPO|1|A1|G|1821
8BPO|1|A1|U|1822
8BPO|1|A1|G|1823

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain D2

Ribosomal_L18_c domain-containing protein

Chain S2

60S ribosomal protein L21

Chain a2

60S ribosomal protein L29