HL_8BPO_053

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8BPO|1|A1|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0742

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BPO|1|A1|U|3796
8BPO|1|A1|C|3797
8BPO|1|A1|U|3798
8BPO|1|A1|A|3799
8BPO|1|A1|A|3800
8BPO|1|A1|U|3801
8BPO|1|A1|U|3802
8BPO|1|A1|A|3803
8BPO|1|A1|G|3804

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain U2

60S ribosomal protein L23