HL_8BPO_063

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8BPO|1|A1|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_063 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1334

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|C|4417
8BPO|1|A1|G|4418
8BPO|1|A1|U|4419
8BPO|1|A1|U|4420
8BPO|1|A1|C|4421
8BPO|1|A1|A|4422
8BPO|1|A1|U|4423
8BPO|1|A1|A|4424
8BPO|1|A1|G|4425

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain I2

Ribosomal protein L10

Chain l2

Ubiquitin-60S ribosomal protein L40