HL_8BQD_003
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 8BQD|1|2|U|159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_003 not in the Motif Atlas
- Homologous match to HL_4V88_188
- Geometric discrepancy: 0.2282
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BQD|1|2|G|154
8BQD|1|2|U|155
8BQD|1|2|A|156
8BQD|1|2|A|157
8BQD|1|2|U|158
8BQD|1|2|U|159
8BQD|1|2|C|160
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain T
- 40S ribosomal protein S6-A
- Chain d
- 40S ribosomal protein S24-A
Coloring options: