HL_8BQD_009

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_009 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1437

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8BQD|1|2|U|368
8BQD|1|2|A|369
8BQD|1|2|A|370
8BQD|1|2|G|371
8BQD|1|2|G|372
8BQD|1|2|G|373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

RPS2 isoform 1

Chain W

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S11-A

Chain b

RPS22A isoform 1