HL_8BQD_021
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.217
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8BQD|1|2|A|900
8BQD|1|2|G|901
8BQD|1|2|G|902
8BQD|1|2|U|903
8BQD|1|2|G|904
8BQD|1|2|A|905
8BQD|1|2|A|906
8BQD|1|2|A|907
8BQD|1|2|U|908
8BQD|1|2|U|909
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- Rps5p
- Chain Q
- 40S ribosomal protein S1-A
- Chain Z
- 40S ribosomal protein S14-B
- Chain e
- RPS26B isoform 1
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