HL_8BQD_025
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_025 not in the Motif Atlas
- Homologous match to HL_4V88_210
- Geometric discrepancy: 0.1289
- The information below is about HL_4V88_210
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BQD|1|2|A|1084
8BQD|1|2|G|1085
8BQD|1|2|A|1086
8BQD|1|2|A|1087
8BQD|1|2|A|1088
8BQD|1|2|U|1089
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- RPS2 isoform 1
- Chain b
- RPS22A isoform 1
- Chain e
- RPS26B isoform 1
Coloring options: