HL_8BQD_041

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8BQD|1|BQ|U|133, 8BQD|1|BQ|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_041 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0661

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8BQD|1|BQ|C|132
8BQD|1|BQ|U|133
8BQD|1|BQ|U|134
8BQD|1|BQ|C|135
8BQD|1|BQ|G|136

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L15-A

Chain BP

60S ribosomal protein L35-A