HL_8BQD_051

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8BQD|1|BQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_051 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BQD|1|BQ|U|640
8BQD|1|BQ|C|641
8BQD|1|BQ|U|642
8BQD|1|BQ|U|643
8BQD|1|BQ|G|644
8BQD|1|BQ|A|645
8BQD|1|BQ|A|646
8BQD|1|BQ|A|647
8BQD|1|BQ|C|648
8BQD|1|BQ|A|649

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BA

60S ribosomal protein L3

Chain BG

RPL32 isoform 1