HL_8BQD_059

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8BQD|1|BQ|C|959, 8BQD|1|BQ|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_059 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1423

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BQD|1|BQ|C|958
8BQD|1|BQ|C|959
8BQD|1|BQ|U|960
8BQD|1|BQ|C|961
8BQD|1|BQ|A|962
8BQD|1|BQ|G|963

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29