HL_8BQD_063
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_063 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.0784
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BQD|1|BQ|G|1148
8BQD|1|BQ|G|1149
8BQD|1|BQ|A|1150
8BQD|1|BQ|U|1151
8BQD|1|BQ|G|1152
8BQD|1|BQ|A|1153
8BQD|1|BQ|A|1154
8BQD|1|BQ|C|1155
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain BG
- RPL32 isoform 1
- Chain BK
- 60S ribosomal protein L33-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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