HL_8BQD_066
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|1354, 8BQD|1|BQ|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_066 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.5653
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BQD|1|BQ|U|1347
8BQD|1|BQ|U|1348
8BQD|1|BQ|G|1349
8BQD|1|BQ|A|1350
8BQD|1|BQ|U|1351
8BQD|1|BQ|A|1352
8BQD|1|BQ|U|1353
8BQD|1|BQ|G|1354
8BQD|1|BQ|A|1355
8BQD|1|BQ|U|1356
8BQD|1|BQ|G|1357
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- RPL4A isoform 1
- Chain BG
- RPL32 isoform 1
- Chain BM
- 60S ribosomal protein L6-B
Coloring options: