HL_8BQD_074

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8BQD|1|BQ|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_074 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.1384

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BQD|1|BQ|G|1680
8BQD|1|BQ|U|1681
8BQD|1|BQ|U|1682
8BQD|1|BQ|A|1683
8BQD|1|BQ|U|1684
8BQD|1|BQ|C|1685
8BQD|1|BQ|U|1686
8BQD|1|BQ|U|1687
8BQD|1|BQ|U|1688

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A