HL_8BQD_088

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BQD|1|BQ|A|2372, 8BQD|1|BQ|A|2373, 8BQD|1|BQ|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_088 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0935

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|G|2369
8BQD|1|BQ|G|2370
8BQD|1|BQ|G|2371
8BQD|1|BQ|A|2372
8BQD|1|BQ|A|2373
8BQD|1|BQ|C|2374
8BQD|1|BQ|G|2375
8BQD|1|BQ|G|2376
8BQD|1|BQ|G|2377
8BQD|1|BQ|C|2378

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BG

RPL32 isoform 1