HL_8BQD_091

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_091 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1599

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BQD|1|BQ|C|2568
8BQD|1|BQ|A|2569
8BQD|1|BQ|U|2570
8BQD|1|BQ|U|2571
8BQD|1|BQ|C|2572
8BQD|1|BQ|G|2573

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A