HL_8BQD_096
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_096 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1153
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BQD|1|BQ|U|2724
8BQD|1|BQ|U|2725
8BQD|1|BQ|C|2726
8BQD|1|BQ|A|2727
8BQD|1|BQ|G|2728
8BQD|1|BQ|U|2729
8BQD|1|BQ|G|2730
8BQD|1|BQ|U|2731
8BQD|1|BQ|G|2732
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
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