HL_8BQD_099

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_099 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1648

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|C|2840
8BQD|1|BQ|G|2841
8BQD|1|BQ|U|2842
8BQD|1|BQ|U|2843
8BQD|1|BQ|C|2844
8BQD|1|BQ|A|2845
8BQD|1|BQ|U|2846
8BQD|1|BQ|A|2847
8BQD|1|BQ|G|2848

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L40-A

Chain BD

RPL10 isoform 1