HL_8BQD_104

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_104 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1282

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BQD|1|BQ|U|3068
8BQD|1|BQ|G|3069
8BQD|1|BQ|A|3070
8BQD|1|BQ|U|3071
8BQD|1|BQ|C|3072
8BQD|1|BQ|A|3073

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A