HL_8BQD_107

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|A|3243, 8BQD|1|BQ|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQD_107 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1737

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|C|3240
8BQD|1|BQ|G|3241
8BQD|1|BQ|G|3242
8BQD|1|BQ|A|3243
8BQD|1|BQ|A|3244
8BQD|1|BQ|A|3245
8BQD|1|BQ|G|3246
8BQD|1|BQ|G|3247

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3