HL_8BQD_111
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQD_111 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1299
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BQD|1|BR|G|88
8BQD|1|BR|G|89
8BQD|1|BR|U|90
8BQD|1|BR|G|91
8BQD|1|BR|A|92
8BQD|1|BR|C|93
Current chains
- Chain BR
- 5S rRNA
Nearby chains
- Chain BD
- RPL10 isoform 1
- Chain BH
- 60S ribosomal protein L20-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: