HL_8BQX_013

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8BQX|1|2|A|492, 8BQX|1|2|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_013 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3007

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8BQX|1|2|C|491
8BQX|1|2|A|492
8BQX|1|2|U|493
8BQX|1|2|U|494
8BQX|1|2|C|495
8BQX|1|2|G|496

Current chains

Chain 2

18S rRNA

Nearby chains