3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BQX_021 not in the Motif Atlas
Homologous match to HL_4V88_206
Geometric discrepancy: 0.217
The information below is about HL_4V88_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

8BQX|1|2|A|900
8BQX|1|2|G|901
8BQX|1|2|G|902
8BQX|1|2|U|903
8BQX|1|2|G|904
8BQX|1|2|A|905
8BQX|1|2|A|906
8BQX|1|2|A|907
8BQX|1|2|U|908
8BQX|1|2|U|909

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
40S ribosomal protein S5
Chain Q
40S ribosomal protein S1-A
Chain Z
40S ribosomal protein S14-B
Chain e
40S ribosomal protein S26-B

Coloring options:


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