HL_8BQX_033

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_033 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1725

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQX|1|2|C|1501
8BQX|1|2|G|1502
8BQX|1|2|A|1503
8BQX|1|2|G|1504
8BQX|1|2|A|1505
8BQX|1|2|G|1506

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A