HL_8BQX_051

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8BQX|1|BQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_051 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BQX|1|BQ|U|640
8BQX|1|BQ|C|641
8BQX|1|BQ|U|642
8BQX|1|BQ|U|643
8BQX|1|BQ|G|644
8BQX|1|BQ|A|645
8BQX|1|BQ|A|646
8BQX|1|BQ|A|647
8BQX|1|BQ|C|648
8BQX|1|BQ|A|649

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BA

60S ribosomal protein L3

Chain BG

RPL32 isoform 1