HL_8BQX_069

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8BQX|1|BQ|G|1507, 8BQX|1|BQ|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_069 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1424

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8BQX|1|BQ|A|1506
8BQX|1|BQ|G|1507
8BQX|1|BQ|C|1508
8BQX|1|BQ|A|1509
8BQX|1|BQ|G|1510
8BQX|1|BQ|U|1511
8BQX|1|BQ|U|1512

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A