HL_8BQX_075

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_075 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.138

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8BQX|1|BQ|G|1719
8BQX|1|BQ|U|1720
8BQX|1|BQ|U|1721
8BQX|1|BQ|U|1722
8BQX|1|BQ|A|1723
8BQX|1|BQ|U|1724
8BQX|1|BQ|C|1725

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain BF

60S ribosomal protein L19-A