HL_8BQX_087

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8BQX|1|BQ|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_087 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.1045

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BQX|1|BQ|U|2292
8BQX|1|BQ|C|2293
8BQX|1|BQ|U|2294
8BQX|1|BQ|A|2295
8BQX|1|BQ|A|2296
8BQX|1|BQ|U|2297
8BQX|1|BQ|U|2298
8BQX|1|BQ|A|2299
8BQX|1|BQ|G|2300

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

60S ribosomal protein L23-A