3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGGAAAGG
Length
8 nucleotides
Bulged bases
8BQX|1|BQ|A|3243, 8BQX|1|BQ|A|3244
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BQX_107 not in the Motif Atlas
Homologous match to HL_5TBW_069
Geometric discrepancy: 0.1737
The information below is about HL_5TBW_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_24596.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
7

Unit IDs

8BQX|1|BQ|C|3240
8BQX|1|BQ|G|3241
8BQX|1|BQ|G|3242
8BQX|1|BQ|A|3243
8BQX|1|BQ|A|3244
8BQX|1|BQ|A|3245
8BQX|1|BQ|G|3246
8BQX|1|BQ|G|3247

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AU
60S ribosomal protein L16-A
Chain BA
60S ribosomal protein L3

Coloring options:


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