HL_8BQX_114
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 8BQX|1|BS|A|111, 8BQX|1|BS|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQX_114 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1371
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8BQX|1|BS|C|108
8BQX|1|BS|A|109
8BQX|1|BS|C|110
8BQX|1|BS|A|111
8BQX|1|BS|U|112
8BQX|1|BS|U|113
8BQX|1|BS|G|114
Current chains
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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