HL_8BR8_003

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_003 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2997

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8BR8|1|LD|C|115
8BR8|1|LD|C|116
8BR8|1|LD|C|117
8BR8|1|LD|C|118
8BR8|1|LD|G|119
8BR8|1|LD|G|120

Current chains

Chain LD

5.8S rRNA

Nearby chains

Chain LY

Ribosomal protein L23A

Chain Lt

Large subunit ribosomal RNA; LSU rRNA