HL_8BR8_005

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_005 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.2281

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|LE|G|87
8BR8|1|LE|G|88
8BR8|1|LE|A|89
8BR8|1|LE|G|90
8BR8|1|LE|A|91
8BR8|1|LE|C|92

Current chains

Chain LE

5S rRNA

Nearby chains

Chain LK

Ribosomal protein L10

Chain LT

60S ribosomal protein L18a

Chain Lt

Large subunit ribosomal RNA; LSU rRNA