HL_8BR8_006
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8BR8|1|Lt|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_006 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.0985
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
8BR8|1|Lt|U|37
8BR8|1|Lt|A|38
8BR8|1|Lt|A|39
8BR8|1|Lt|G|40
8BR8|1|Lt|C|41
8BR8|1|Lt|A|42
8BR8|1|Lt|U|43
8BR8|1|Lt|A|44
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lp
- Ribosomal protein L44
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