HL_8BR8_009

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

8BR8|1|Lt|G|121, 8BR8|1|Lt|G|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_009 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.4254

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|G|120
8BR8|1|Lt|G|121
8BR8|1|Lt|C|122
8BR8|1|Lt|G|123
8BR8|1|Lt|C|124

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LD

5.8S rRNA

Chain LI

60S ribosomal protein L7a

Chain LO

Ribosomal protein L15

Chain Li

Ribosomal protein L29