HL_8BR8_013
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CUUGAGCGUG
- Length
- 10 nucleotides
- Bulged bases
- 8BR8|1|Lt|C|238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_013 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.2454
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
8BR8|1|Lt|C|232
8BR8|1|Lt|U|233
8BR8|1|Lt|U|234
8BR8|1|Lt|G|235
8BR8|1|Lt|A|236
8BR8|1|Lt|G|237
8BR8|1|Lt|C|238
8BR8|1|Lt|G|239
8BR8|1|Lt|U|240
8BR8|1|Lt|G|241
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lp
- Ribosomal protein L44
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