HL_8BR8_018

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCUCGAAACA

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|C|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_018 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1046

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BR8|1|Lt|U|388
8BR8|1|Lt|C|389
8BR8|1|Lt|U|390
8BR8|1|Lt|C|391
8BR8|1|Lt|G|392
8BR8|1|Lt|A|393
8BR8|1|Lt|A|394
8BR8|1|Lt|A|395
8BR8|1|Lt|C|396
8BR8|1|Lt|A|397

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain Lb

Ribosomal protein L27a

Chain Lf

Ribosomal protein L32