HL_8BR8_022

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUGCG

Length

6 nucleotides

Bulged bases

8BR8|1|Lt|C|486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_022 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2819

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8BR8|1|Lt|C|482
8BR8|1|Lt|C|483
8BR8|1|Lt|U|484
8BR8|1|Lt|G|485
8BR8|1|Lt|C|486
8BR8|1|Lt|G|487

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

60S ribosomal protein L13

Chain Lb

Ribosomal protein L27a