HL_8BR8_026

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCCCAG

Length

6 nucleotides

Bulged bases

8BR8|1|Lt|C|676, 8BR8|1|Lt|A|679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_026 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3396

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BR8|1|Lt|U|675
8BR8|1|Lt|C|676
8BR8|1|Lt|C|677
8BR8|1|Lt|C|678
8BR8|1|Lt|A|679
8BR8|1|Lt|G|680

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lb

Ribosomal protein L27a

Chain Lp

Ribosomal protein L44