HL_8BR8_028

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGGCCUG

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|C|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_028 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.2263

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BR8|1|Lt|C|788
8BR8|1|Lt|U|789
8BR8|1|Lt|G|790
8BR8|1|Lt|G|791
8BR8|1|Lt|C|792
8BR8|1|Lt|C|793
8BR8|1|Lt|U|794
8BR8|1|Lt|G|795

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LU

Ribosomal protein L21

Chain Lc

60S ribosomal protein L29