HL_8BR8_034

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCGCCCC

Length

7 nucleotides

Bulged bases

8BR8|1|Lt|C|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_034 not in the Motif Atlas

Geometric match to HL_8VMA_003

Geometric discrepancy: 0.3662

The information below is about HL_8VMA_003

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

8BR8|1|Lt|G|1149
8BR8|1|Lt|C|1150
8BR8|1|Lt|G|1151
8BR8|1|Lt|C|1152
8BR8|1|Lt|C|1153
8BR8|1|Lt|C|1154
8BR8|1|Lt|C|1155

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Le

Ribosomal protein L31B