HL_8BR8_035

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGCAUCUG

Length

9 nucleotides

Bulged bases

8BR8|1|Lt|G|1191, 8BR8|1|Lt|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_035 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.3221

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BR8|1|Lt|C|1189
8BR8|1|Lt|U|1190
8BR8|1|Lt|G|1191
8BR8|1|Lt|C|1192
8BR8|1|Lt|A|1193
8BR8|1|Lt|U|1194
8BR8|1|Lt|C|1195
8BR8|1|Lt|U|1196
8BR8|1|Lt|G|1197

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LQ

Ribosomal protein L17

Chain LS

Ribosomal protein L19