HL_8BR8_045

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8BR8|1|Lt|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_045 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0993

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BR8|1|Lt|C|1555
8BR8|1|Lt|C|1556
8BR8|1|Lt|U|1557
8BR8|1|Lt|C|1558
8BR8|1|Lt|G|1559
8BR8|1|Lt|G|1560

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

60S ribosomal protein L41

Chain Lq

Ribosomal protein L37a

Chain St

Small subunit ribosomal RNA; SSU rRNA