HL_8BR8_062
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCGGCCGCG
- Length
- 9 nucleotides
- Bulged bases
- 8BR8|1|Lt|C|2200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_062 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1771
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8BR8|1|Lt|C|2199
8BR8|1|Lt|C|2200
8BR8|1|Lt|G|2201
8BR8|1|Lt|G|2202
8BR8|1|Lt|C|2203
8BR8|1|Lt|C|2204
8BR8|1|Lt|G|2205
8BR8|1|Lt|C|2206
8BR8|1|Lt|G|2207
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LM
- 60S ribosomal protein L13
- Chain Lb
- Ribosomal protein L27a
- Chain Lj
- Ribosomal protein L36-1
- Chain Lp
- Ribosomal protein L44
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