HL_8BR8_063

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCCCGCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_063 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1584

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|C|2263
8BR8|1|Lt|G|2264
8BR8|1|Lt|C|2265
8BR8|1|Lt|C|2266
8BR8|1|Lt|C|2267
8BR8|1|Lt|G|2268
8BR8|1|Lt|C|2269
8BR8|1|Lt|A|2270
8BR8|1|Lt|G|2271

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LK

Ribosomal protein L10

Chain Ls

Ubiquitin/Ribosomal protein L40e