HL_8BR8_064

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCACCGG

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|G|2321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1339

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8BR8|1|Lt|C|2320
8BR8|1|Lt|G|2321
8BR8|1|Lt|C|2322
8BR8|1|Lt|A|2323
8BR8|1|Lt|C|2324
8BR8|1|Lt|C|2325
8BR8|1|Lt|G|2326
8BR8|1|Lt|G|2327

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain Ls

Ubiquitin/Ribosomal protein L40e