HL_8BR8_077

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_077 not in the Motif Atlas

Geometric match to HL_4QLM_001

Geometric discrepancy: 0.1921

The information below is about HL_4QLM_001

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8BR8|1|St|G|138
8BR8|1|St|C|139
8BR8|1|St|A|140
8BR8|1|St|A|141
8BR8|1|St|C|142
8BR8|1|St|C|143

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain Sb

Ribosomal protein S24